Recent selected publications
Reut Mealem, Thomas. A. Phillips, Leor Ariel Rose, Stefania Marcotti, Maddy Parsons, Zaritsky A. Spatially distinct chromatin compaction states predict neoadjuvant chemotherapy resistance in Triple Negative Breast Cancer. bioRxiv. DOI: https://doi.org/10.64898/2025.12.04.692131
Zamir A, Amitay Y, Tamir Y, Keren L, Zaritsky A. Context-dependent spatial multicellular network motifs for single-cell spatial biology. bioRxiv. DOI: https://doi.org/10.1101/2025.05.05.651422
Tamir Y, Bussi Y, Owczarek C, Luque L, Torrisi G, Rose LA, Kliper-Gross O, Schumacher L, Parsons M, Keren L, Zaritsky A. Data-modeling the interplay between single cell shape, single cell protein expression, and tissue state. Cell Reports Methods. DOI: 10.1016/j.crmeth.2026.101463
Shpigler A*, Kolet N*, Golan S, Weisbart E, Zaritsky A. Anomaly detection for high-content image-based phenotypic cell profiling. bioRxiv. DOI: https://doi.org/10.1101/2024.06.01.595856
Elmalam N and Zaritsky A. Cell-context dependent in silico organelle localization in label-free microscopy images. Nature Methods. DOI: https://doi.org/10.1038/s41592-025-02960-4
Hollander S, Guo Y, Wolfenson H§, Zaritsky A. Spatiotemporal analysis of F-actin polymerization with micropillar arrays reveals synchronization between adhesion sites. Molecular Biology of the Cell (MBoC) 2024. DOI: https://doi.org/10.1091/mbc.E24-06-0276
Rotem O, Schwartz T, Maor R, Tauber Y, Tsarfati Shapiro M, Meseguer M, Gilboa D, Seidman D.S., Zaritsky A. Visual interpretability of image-based classification models by generative latent space disentanglement applied to in vitro fertilization. Nature Communications 2024. DOI: https://doi.org/10.1038/s41467-024-51136-9
Rotem O & Zaritsky A. Visual interpretability of bioimaging deep learning models. Nature Methods 2024. DOI: https://doi.org/10.1038/s41592-024-02322-6
Elmalam N*, Ben Nedava L*, Zaritsky A. In silico labeling in cell biology: potential and limitations. Current Opinion in Cell Biology 2024. DOI: https://doi.org/10.1016/j.ceb.2024.102378.
Ben David S*, Ho K.Y.L.*, Tanentzapf G§, Zaritsky A§. Formation of recurring transient Ca2+-based intercellular communities during Drosophila hematopoiesis. Proceedings of the National Academy of Sciences 2024. DOI: https://doi.org/10.1073/pnas.2318155121
Shakarchy A*, Zarfati G*, Hazak A, Mealem R, Huk K, Avinoam O§, Zaritsky A§. Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion. Molecular Systems Biology 2024. DOI: https://doi.org/10.1038/s44320-024-00010-3
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