top of page
Search
Context-dependent Identification of Spatial Motifs (CISM) preprint @bioRxiv!
CISM is a new method for uncovering fine-scale intercellular modules associated with disease states from single-cell spatial data....
May 11, 2025
Our paper was featured on the inside back cover!
Our paper showing that “shortcut learning” prevents from machine learning models trained to predict embryo implantation to effectively...
Dec 24, 2024
Assaf was named Allen Frontiers Distinguished Investigator in Organelle Communication!
Together with Sarah Cohen (UNC) and Shalin Mehta (CZ Biohub) we will develop tools for data-driven modeling of inter-organelle dynamic...
Dec 3, 2024
Our paper was featured on the cover!
Our paper on quantifying spatiotemporal inter-adhesion communication was featured on the the cover of Molecular Biology of the Cell...
Dec 1, 2024
Assaf was interviewed (Hebrew) to the "Biology for non-biologists" podcast!
להבין את הרשת החברתית של התאים https://t.co/AuiztjgEeq תודה לדבי טויבר ולברק רוטבלט מהמחלקה למדעי החיים על ההזמנה!
Nov 13, 2024
Context-dependent in silico labeling preprint @bioRxiv!
CELTIC is a model for cross-modality bioimage translation that incorporates biological-meaningful priors to improve the image-to-image...
Nov 10, 2024
Inter-adhesion F-actin communication paper is published!
We used micropillar-arrays to quantify the integration of local inter-adhesion F-actin information-flows to synchronize the adhesion...
Nov 5, 2024
Amos Zamir graduated!
Congratulations to Amos for submitting his Ph.D. dissertation today! Amos developing computational methods to characterize intermediate...
Oct 31, 2024
Perspective on bioimage data sharing and interdisciplinary collaboration is out!
In a new Perspective we propose ‘datathons’ to bring bioimage data 'producers' and 'consumers' together to ‘crack tough nuts’ and solve...
Oct 23, 2024
Nitsan Elmalam graduated!
Congratulations to Nitsan for completing his M.Sc .! Nitsan developed a method that "injects" cellular context (e.g., mitosis stage, cell...
Oct 6, 2024
Alon, Omri and Omer joined the lab
Alon, Omri and Omer decided to pursue their M.Sc. research in our lab!
Oct 1, 2024
Popular press on Oded's visual interpretability project!
Ben-Gurion University Researchers Develop Tool To Decipher AI Medical Decisions AI assesses embryo quality like a human expert (Hebrew)...
Sep 9, 2024
IVF embryo implantation vs. ranking - paper is published!
We established that optimizing a machine learning model to predict in vitro fertilization (IVF) embryo implantation success is not an...
Sep 4, 2024
DISCOVER visual interpretability paper is published!
DISCOVER is a generative model for visual interpretability of image-based classification models. DISCOVER’s disentanglement module...
Aug 29, 2024
Alon Shpigler graduated!
Congratulations to Alon for completing his Ph.D.! Alon adopted concepts from anomaly detection to improve representations of high-content...
Aug 24, 2024
Grant awarded from the Wellcome Trust!
Our proposal "Multimodal, multiscale functional tissue state imaging" led by Maddy Parsons was selected for funding for the Bioimaging...
Aug 13, 2024
Sarit Hollander graduated!
Congratulations to Sarit for completing her M.Sc.! Sarit developed a computational method to measure intracellular adhesion-mediated...
Aug 12, 2024
Our Comment on visual interpretability of bioimaging deep learning models is out!
Deep learning's success in bioimaging comes at the expense of lack of biologically meaningful interpretations. In a new Comment Oded and...
Aug 9, 2024
Grant awarded from the BSF!
Our proposal "Data-driven spatiotemporal characterization of cell death" with Mike Overholtzer was selected for funding by the U...
Aug 5, 2024
Quantifying spatiotemporal inter-adhesion communication preprint @bioRxiv!
We repurposed micropillar-arrays (usually used to measure traction forces) to quantify spatiotemporal inter-adhesion communication! This...
Jun 26, 2024
bottom of page