IVF embryo implantation vs. ranking - paper is published!
We established that optimizing a machine learning model to predict in vitro fertilization (IVF) embryo implantation success is not an...
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- Aug 29
DISCOVER visual interpretability paper is published!
DISCOVER is a generative model for visual interpretability of image-based classification models. DISCOVER’s disentanglement module...
- Aug 24
Alon Shpigler graduated!
Congratulations to Alon for completing his Ph.D.! Alon adopted concepts from anomaly detection to improve representations of high-content...
- Aug 13
Grant awarded from the Wellcome Trust!
Our proposal "Multimodal, multiscale functional tissue state imaging" led by Maddy Parsons was selected for funding for the Bioimaging...
- Aug 12
Sarit Hollander graduated!
Congratulations to Sarit for completing her M.Sc.! Sarit developed a computational method to measure intracellular adhesion-mediated...
- Aug 9
Our Comment on visual interpretability of bioimaging deep learning models is out!
Deep learning's success in bioimaging comes at the expense of lack of biologically meaningful interpretations. In a new Comment Oded and...
- Aug 5
Grant awarded from the BSF!
Our proposal "Data-driven spatiotemporal characterization of cell death" with Mike Overholtzer was selected for funding by the U...
- Jun 26
Quantifying spatiotemporal inter-adhesion communication preprint @bioRxiv!
We repurposed micropillar-arrays (usually used to measure traction forces) to quantify spatiotemporal inter-adhesion communication! This...
- Jun 9
Anomaly-based representation for image-based cell profiling preprint @bioRxiv!
We adopted concepts from anomaly detection to improve representations of high-content image-based phenotypic profiling while maintaining...
- Jun 6
Our Review on in silico labeling is out!
In silico labeling as the computational cross-modality image translation where the output modality is a subcellular marker that is not...
- Jun 2
Cell shape --> protein expression preprint @bioRxiv!
We systematically analyzed the interplay between single cell shape, single cell protein expression, and tissue state in human disease...
- May 9
Lab retreat!
Relaxing annual retreat at Haifa!
- Apr 11
Intercellular communication communities paper published!
We identified an intermediate spatial scale of intercellular communication: recurrent transient communities (“hotspots”) that form over...
- Apr 11
AI Flexes Its Muscles!
Nice writeup on our recent joint paper with Ori Avinoam on machine learning inference of continuous single-cell state transitions 💫...
- Mar 4
Our paper was featured on the cover!
Our machine learning inference of continuous single-cell state transitions was featured on the cover of Molecular Systems Biology! Joint...
- Mar 1
Collaborative perspective on multimodal bioimaging!
Multimodal bioimaging Perspective by Maddy Parsons (Kings College London) and colleagues is out! Leor Rose and Assaf contributed to the...
- Feb 8
(Hebrew) interview about our IVF siblings paper!
אחים עובריים תורמים לחיזוי ההצלחה של הפריה חוץ גופית https://www.bgu.ac.il/articles/fetal-siblings/ מחקר של נעם צוקרמן בשיתוף עם עודד...
- Jan 18
Machine learning inference of continuous single-cell state transitions paper published!
We demonstrate that machine learning can be applied to live cell imaging data to measure gradual single cell state transitions, and apply...
- Jan 1, 2024
Fellowship awarded to Orit!
Congratulations to Orit for being awarded the (very competitive) Israeli Council for Higher Education "VATAT" support for excellent...
- Dec 14, 2023
Saar Ben David graduated!
Congratulations to Saar for completing his M.Sc.! Saar discovered that tissue scale signaling regulation can arise from local...
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